PH01000259G1120's details annotation
1.Annotation
ICBR annotation: auxin response factor, putative, expressed
Blast result AT1G19220 : 7.00E-86
Blast annotation: auxin response factor 19
2.Location
Scaffold: PH01000259
Strand: -
| Region | Start | End |
| gene | 708561 | 713626 |
| mRNA | 708561 | 713626 |
| exon | 708561 | 708846 |
| exon | 709232 | 711081 |
| exon | 711251 | 711389 |
| exon | 711474 | 711549 |
| exon | 711772 | 711894 |
| exon | 711986 | 712069 |
| exon | 712296 | 712405 |
| exon | 712840 | 712924 |
| exon | 713018 | 713626 |
| CDS | 708652 | 708846 |
| CDS | 709232 | 711081 |
| CDS | 711251 | 711389 |
| CDS | 711474 | 711549 |
| CDS | 711772 | 711894 |
| CDS | 711986 | 712069 |
| CDS | 712296 | 712405 |
| CDS | 712840 | 712924 |
| CDS | 713018 | 713070 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000618 | TKL-Pl-4 (from iTAK) Valine,_leucine_and_isoleucine_degradation |
| coexpression network | CFinderM000619 | TKL-Pl-4 (from iTAK) Ubiquitin_mediated_proteolysis |
| coexpression network | CFinderM001237 | |
| coexpression network | CFinderM001327 | |
| coexpression network | CFinderM001328 | GT32 GlycosylTransferases Golgi stack, CMGC_SRPK (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06507.12 | Auxin_resp | 94 | 177 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0009725 | response to hormone stimulus |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.