PH01000261G1160's details annotation
1.Annotation
ICBR annotation: NADH-cytochrome b5 reductase, putative, expressed
Blast result AT5G17770 : 4.00E-124
Blast annotation: NADH:cytochrome B5 reductase 1
2.Location
Scaffold: PH01000261
Strand: +
| Region | Start | End |
| gene | 714719 | 718482 |
| mRNA | 714719 | 718482 |
| exon | 714719 | 715007 |
| exon | 715613 | 715754 |
| exon | 715871 | 715961 |
| exon | 716116 | 716193 |
| exon | 716426 | 716506 |
| exon | 716599 | 716688 |
| exon | 717214 | 717279 |
| exon | 717490 | 717576 |
| exon | 717690 | 718482 |
| CDS | 714896 | 715007 |
| CDS | 715613 | 715754 |
| CDS | 715871 | 715961 |
| CDS | 716116 | 716193 |
| CDS | 716426 | 716506 |
| CDS | 716599 | 716688 |
| CDS | 717214 | 717279 |
| CDS | 717490 | 717576 |
| CDS | 717690 | 717782 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001013 | malate dehydrogenase (NADP+) activity, pantoate-beta-alanine ligase activity, pantothenate biosynthetic process, malate dehydrogenase activity, malate metabolic process, oxidoreductase activity, Pantothenate_and_CoA_biosynthesis beta-Alanine_metabolism Pyruvate_metabolism Carbon_fixation_in_photosynthetic_organisms Amino_sugar_and_nucleotide_sugar_metabolism |
| coexpression network | CFinderM001288 | HB-KNOX Transcription_Regulator(from iTAK) TALE Transcription_Regulator(from PlantTFDB) MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) Amino_sugar_and_nucleotide_sugar_metabolism Glutathione_metabolism SNARE_interactions_in_vesicular_transport Ascorbate_and_aldarate_metabolism |
| coexpression network | CFinderM001562 | HB-KNOX Transcription_Regulator(from iTAK) sterol_24-C-methyltransferase_activity TALE Transcription_Regulator(from PlantTFDB) SNARE_interactions_in_vesicular_transport Steroid_biosynthesis MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) Ascorbate_and_aldarate_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00970.23 | FAD_binding_6 | 48 | 146 |
| PF00175.20 | NAD_binding_1 | 156 | 262 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Amino sugar and nucleotide sugar metabolism | cytochrome-b5 reductase [EC:1.6.2.2] | ko00520 | K00326 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.