PH01000272G0180's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G00440 : 2.60E-36
Blast annotation: Protein of unknown function (DUF3741)
2.Location
Scaffold: PH01000272
Strand: -
| Region | Start | End |
| gene | 109231 | 116065 |
| mRNA | 109231 | 116065 |
| exon | 109231 | 109898 |
| exon | 109988 | 110240 |
| exon | 110329 | 110423 |
| exon | 110526 | 112002 |
| exon | 112896 | 112948 |
| exon | 113089 | 113221 |
| exon | 113288 | 113290 |
| exon | 114103 | 114350 |
| exon | 115341 | 116065 |
| CDS | 109321 | 109898 |
| CDS | 109988 | 110240 |
| CDS | 110329 | 110423 |
| CDS | 110526 | 112002 |
| CDS | 112896 | 112948 |
| CDS | 113089 | 113221 |
| CDS | 113288 | 113290 |
| CDS | 114103 | 114350 |
| CDS | 115341 | 115524 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000518 | MYB Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001114 | MYB Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12552.7 | DUF3741 | 332 | 374 |
| PF14309.5 | DUF4378 | 856 | 1000 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.