PH01000274G0920's details annotation
1.Annotation
ICBR annotation: glycosyl hydrolase family 47 domain contain protein, expressed
Blast result AT1G30000 : 0.00E+00
Blast annotation: alpha-mannosidase 3
2.Location
Scaffold: PH01000274
Strand: +
| Region | Start | End |
| gene | 638490 | 642642 |
| mRNA | 638490 | 642642 |
| exon | 638490 | 638893 |
| exon | 640229 | 641181 |
| exon | 641327 | 641588 |
| exon | 641747 | 641944 |
| exon | 642249 | 642317 |
| exon | 642349 | 642642 |
| CDS | 638798 | 638893 |
| CDS | 640229 | 641181 |
| CDS | 641327 | 641588 |
| CDS | 641747 | 641944 |
| CDS | 642249 | 642317 |
| CDS | 642349 | 642588 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000681 | protein arginylation, GH47 Glycoside_Hydrolases arginyltransferase activity, mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GH47 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01532.19 | Glyco_hydro_47 | 142 | 502 |
| PF01532.19 | Glyco_hydro_47 | 526 | 593 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| N-Glycan biosynthesis | mannosyl-oligosaccharide alpha-1,2-mannosidase [EC:3.2.1.113] | ko00510 | K01230 |
| Various types of N-glycan biosynthesis | mannosyl-oligosaccharide alpha-1,2-mannosidase [EC:3.2.1.113] | ko00513 | K01230 |
| Protein processing in endoplasmic reticulum | mannosyl-oligosaccharide alpha-1,2-mannosidase [EC:3.2.1.113] | ko04141 | K01230 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004571 | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity |
| GO:0005509 | calcium ion binding |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.