PH01000287G1020's details annotation
1.Annotation
ICBR annotation: CCR4-Not complex component, Not1domain containing protein, expressed
Blast result AT1G02080 : 2.90E-98
Blast annotation: transcription regulators
2.Location
Scaffold: PH01000287
Strand: -
| Region | Start | End |
| gene | 630710 | 642379 |
| mRNA | 630710 | 642379 |
| exon | 630710 | 630900 |
| exon | 630979 | 631080 |
| exon | 631168 | 631413 |
| exon | 631687 | 631813 |
| exon | 632934 | 633115 |
| exon | 633199 | 633303 |
| exon | 633392 | 633473 |
| exon | 633979 | 634040 |
| exon | 634115 | 634261 |
| exon | 635102 | 635167 |
| exon | 636621 | 636758 |
| exon | 636843 | 636905 |
| exon | 638243 | 638323 |
| exon | 638454 | 638636 |
| exon | 638672 | 638772 |
| exon | 639401 | 639527 |
| exon | 641158 | 641274 |
| exon | 641361 | 641438 |
| exon | 642265 | 642379 |
| CDS | 630781 | 630900 |
| CDS | 630979 | 631080 |
| CDS | 631168 | 631413 |
| CDS | 631687 | 631813 |
| CDS | 632934 | 633115 |
| CDS | 633199 | 633303 |
| CDS | 633392 | 633473 |
| CDS | 633979 | 634040 |
| CDS | 634115 | 634261 |
| CDS | 635102 | 635167 |
| CDS | 636621 | 636758 |
| CDS | 636843 | 636905 |
| CDS | 638243 | 638323 |
| CDS | 638454 | 638636 |
| CDS | 638672 | 638772 |
| CDS | 639401 | 639527 |
| CDS | 641158 | 641274 |
| CDS | 641361 | 641438 |
| CDS | 642265 | 642369 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001261 | thymidylate synthase activity, dihydrofolate reductase activity, dTMP biosynthetic process, ribosome biogenesis, nucleotidyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04054.14 | Not1 | 423 | 530 |
| PF04054.14 | Not1 | 590 | 730 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.