|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | thymidylate synthase activity, | 0.002343896 | GO:0004799 | | dihydrofolate reductase activity, | 0.002343896 | GO:0004146 | | dTMP biosynthetic process, | 0.003093943 | GO:0006231 | | ribosome biogenesis, | 0.014923708 | GO:0042254 | | nucleotidyltransferase activity, | 0.030080672 | GO:0016779 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000287G1020 | transcription regulators | AT1G02080 (2.90E-98) | | PH01000864G0580 | thymidylate synthase 2 | AT4G34570 (3.00E-113) | | PH01001006G0450 | Nucleotidyltransferase family protein | AT4G00060 (2.00E-145) | | PH01001502G0060 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | AT1G06720 (6.00E-168) | | PH01003505G0200 | Protein of unknown function (DUF1682) | AT4G24330 (6.00E-117) | | PH01006624G0010 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT4G01570 (1.00E-66) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000170 | cullin-RING ubiquitin ligase complex,
ubiquitin protein ligase binding,
ubiquitin-dependent protein catabolic process,
| details | | CFinderM000229 | GT2 GlycosylTransferases
NuA4_histone_acetyltransferase_complex
histone_H2A_acetylation
protein homooligomerization,
histone_H4_acetylation
chromatin remodeling,
negative_regulation_of_transcription,_DNA-templated
RNA modification,
pseudouridine synthesis,
| details | | CFinderM000389 | protein folding,
response to heat,
unfolded protein binding,
| details | | CFinderM000453 | carbon fixation,
response to wounding,
Lysine_degradation
SET Transcription_Regulator(from iTAK)
| details | | CFinderM000501 | oligosaccharide metabolic process,
mannosyl-oligosaccharide glucosidase activity,
Peroxisome
N-Glycan_biosynthesis
| details | | CFinderM000540 | condensin_complex
CK1_CK1 (from iTAK)
mitotic_chromosome_condensation
| details | | CFinderM000627 | DNA primase activity,
DNA_replication
| details | | CFinderM000670 | NAC Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-III (from iTAK)
| details | | CFinderM000734 | WASH_complex
cytoskeleton,
phagocytosis,
malate metabolic process,
cellular carbohydrate metabolic process,
malate dehydrogenase activity,
L-malate dehydrogenase activity,
| details | | CFinderM001015 | DNA primase activity,
| details | | CFinderM001203 | SNARE_interactions_in_vesicular_transport
ubiquitin-dependent protein catabolic process,
| details | | CFinderM001242 | mitotic_spindle_assembly_checkpoint
WASH_complex
PHD Transcription_Regulator(from iTAK)
N-Glycan_biosynthesis
Various_types_of_N-glycan_biosynthesis
| details | | CFinderM001248 | DNA primase activity,
| details | | CFinderM001253 | CMGC_CLK (from iTAK)
membrane,
| details | | CFinderM001360 | cysteine-type peptidase activity,
galactosyltransferase activity,
protein glycosylation,
| details | | CFinderM001390 | dTMP biosynthetic process,
dihydrofolate reductase activity,
thymidylate synthase activity,
mRNA_surveillance_pathway
| details | | CFinderM001424 | WASH_complex
N-Glycan_biosynthesis
Various_types_of_N-glycan_biosynthesis
Peroxisome
| details | | CFinderM001581 | WASH_complex
DNA_ligation_involved_in_DNA_repair
drug_binding
DNA_ligase_activity
DNA ligase (ATP) activity,
DNA recombination,
DNA repair,
| details | | CFinderM001711 | intracellular protein transport,
binding,
| details | | CFinderM001799 | Various_types_of_N-glycan_biosynthesis
Base_excision_repair
N-Glycan_biosynthesis
nuclease activity,
endonuclease activity,
NAC Transcription_Regulator(from PlantTFDB)
| details |
4.Expression profilings |
