PH01003505G0200's details annotation
1.Annotation
ICBR annotation: coiled-coil domain-containing protein 47 precursor, putative, expressed
Blast result AT4G24330 : 6.00E-117
Blast annotation: Protein of unknown function (DUF1682)
2.Location
Scaffold: PH01003505
Strand: +
| Region | Start | End |
| gene | 123956 | 131072 |
| mRNA | 123956 | 131072 |
| exon | 123956 | 128371 |
| exon | 129571 | 129771 |
| exon | 129862 | 130008 |
| exon | 130796 | 131072 |
| CDS | 127382 | 128371 |
| CDS | 129571 | 129771 |
| CDS | 129862 | 130008 |
| CDS | 130796 | 130993 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000170 | cullin-RING ubiquitin ligase complex, ubiquitin protein ligase binding, ubiquitin-dependent protein catabolic process, |
| coexpression network | CFinderM000229 | GT2 GlycosylTransferases NuA4_histone_acetyltransferase_complex histone_H2A_acetylation protein homooligomerization, histone_H4_acetylation chromatin remodeling, negative_regulation_of_transcription,_DNA-templated RNA modification, pseudouridine synthesis, |
| coexpression network | CFinderM000389 | protein folding, response to heat, unfolded protein binding, |
| coexpression network | CFinderM000453 | carbon fixation, response to wounding, Lysine_degradation SET Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM000501 | oligosaccharide metabolic process, mannosyl-oligosaccharide glucosidase activity, Peroxisome N-Glycan_biosynthesis |
| coexpression network | CFinderM000540 | condensin_complex CK1_CK1 (from iTAK) mitotic_chromosome_condensation |
| coexpression network | CFinderM000627 | DNA primase activity, DNA_replication |
| coexpression network | CFinderM000734 | WASH_complex cytoskeleton, phagocytosis, malate metabolic process, cellular carbohydrate metabolic process, malate dehydrogenase activity, L-malate dehydrogenase activity, |
| coexpression network | CFinderM001015 | DNA primase activity, |
| coexpression network | CFinderM001203 | SNARE_interactions_in_vesicular_transport ubiquitin-dependent protein catabolic process, |
| coexpression network | CFinderM001242 | mitotic_spindle_assembly_checkpoint WASH_complex PHD Transcription_Regulator(from iTAK) N-Glycan_biosynthesis Various_types_of_N-glycan_biosynthesis |
| coexpression network | CFinderM001248 | DNA primase activity, |
| coexpression network | CFinderM001253 | CMGC_CLK (from iTAK) membrane, |
| coexpression network | CFinderM001261 | thymidylate synthase activity, dihydrofolate reductase activity, dTMP biosynthetic process, ribosome biogenesis, nucleotidyltransferase activity, |
| coexpression network | CFinderM001360 | cysteine-type peptidase activity, galactosyltransferase activity, protein glycosylation, |
| coexpression network | CFinderM001424 | WASH_complex N-Glycan_biosynthesis Various_types_of_N-glycan_biosynthesis Peroxisome |
| coexpression network | CFinderM001581 | WASH_complex DNA_ligation_involved_in_DNA_repair drug_binding DNA_ligase_activity DNA ligase (ATP) activity, DNA recombination, DNA repair, |
| coexpression network | CFinderM001799 | Various_types_of_N-glycan_biosynthesis Base_excision_repair N-Glycan_biosynthesis nuclease activity, endonuclease activity, NAC Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07946.13 | DUF1682 | 146 | 447 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.