PH01001502G0060's details annotation
1.Annotation
ICBR annotation: AARP2CN domain containing protein, expressed
Blast result AT1G06720 : 6.00E-168
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01001502
Strand: -
| Region | Start | End |
| gene | 55244 | 67423 |
| mRNA | 55244 | 67423 |
| exon | 55244 | 55636 |
| exon | 55903 | 56121 |
| exon | 56661 | 56930 |
| exon | 57388 | 57584 |
| exon | 57751 | 57850 |
| exon | 58133 | 58557 |
| exon | 59165 | 59402 |
| exon | 60661 | 60871 |
| exon | 61139 | 61182 |
| exon | 61759 | 61806 |
| exon | 62197 | 62315 |
| exon | 62439 | 62529 |
| exon | 62605 | 62736 |
| exon | 64382 | 67423 |
| CDS | 55571 | 55636 |
| CDS | 55903 | 56121 |
| CDS | 56661 | 56930 |
| CDS | 57388 | 57584 |
| CDS | 57751 | 57850 |
| CDS | 58133 | 58557 |
| CDS | 59165 | 59402 |
| CDS | 60661 | 60871 |
| CDS | 61139 | 61182 |
| CDS | 61759 | 61806 |
| CDS | 62197 | 62315 |
| CDS | 62439 | 62529 |
| CDS | 62605 | 62736 |
| CDS | 64382 | 64516 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000670 | NAC Transcription_Regulator(from PlantTFDB) RLK-Pelle_LRR-III (from iTAK) |
| coexpression network | CFinderM001261 | thymidylate synthase activity, dihydrofolate reductase activity, dTMP biosynthetic process, ribosome biogenesis, nucleotidyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08142.11 | AARP2CN | 195 | 280 |
| PF04950.11 | RIBIOP_C | 651 | 761 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
| GO:0042254 | ribosome biogenesis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.