PH01000290G0630's details annotation
1.Annotation
ICBR annotation: harpin-induced protein 1 domain containing protein, expressed
Blast result AT5G56050 : 7.50E-46
Blast annotation: -
2.Location
Scaffold: PH01000290
Strand: -
| Region | Start | End |
| gene | 450361 | 453339 |
| mRNA | 450361 | 453339 |
| exon | 450361 | 453339 |
| CDS | 450584 | 451132 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000115 | Dof Transcription_Regulator(from PlantTFDB) AUX/IAA Transcription_Regulator(from iTAK) C2C2-Dof Transcription_Regulator(from iTAK) TKL-Pl-4 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03168.12 | LEA_2 | 63 | 153 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.