PH01000291G0430's details annotation
1.Annotation
ICBR annotation: pentatricopeptide, putative, expressed
Blast result AT5G46460 : 7.00E-178
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01000291
Strand: +
| Region | Start | End |
| gene | 274428 | 277067 |
| mRNA | 274428 | 277067 |
| exon | 274428 | 277067 |
| CDS | 274894 | 276726 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000587 | protein binding, acid-amino acid ligase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 8 | 33 |
| PF01535.19 | PPR | 40 | 68 |
| PF12854.6 | PPR_1 | 69 | 96 |
| PF01535.19 | PPR | 102 | 127 |
| PF13041.5 | PPR_2 | 201 | 249 |
| PF13041.5 | PPR_2 | 303 | 350 |
| PF01535.19 | PPR | 378 | 402 |
| PF14432.5 | DYW_deaminase | 477 | 600 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.