Annotation of co-expression genes

PH01000291G0790's details annotation

1.Annotation

ICBR annotation: eukaryotic translation initiation factor, putative, expressed

Blast result AT4G18040 : 3.90E-79
Blast annotation: eukaryotic translation initiation factor 4E

2.Location

Scaffold: PH01000291
Strand: -

RegionStartEnd
gene523502524263
mRNA523502524263
exon523502524263
CDS523630524076

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001122cis-Golgi network,
translational initiation,
RNA_transport
coexpression networkCFinderM001490protein phosphatase type 2A complex,
Others Transcription_Regulator(from iTAK)
protein phosphatase type 2A regulator activity,
translational initiation,
RNA_transport
mRNA_surveillance_pathway

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01652.17IF4E44195

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
RNA transporttranslation initiation factor 4Eko03013K03259

10.Gene Ontology

GO AccessionGO Annotation
GO:0003723RNA binding
GO:0003743translation initiation factor activity
GO:0005737cytoplasm
GO:0006413translational initiation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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