Annotation of co-expression genes

PH01000295G0240's details annotation

1.Annotation

ICBR annotation: methyladenine glycosylase, putative, expressed

Blast result AT3G12710 : 3.60E-82
Blast annotation: DNA glycosylase superfamily protein

2.Location

Scaffold: PH01000295
Strand: +

RegionStartEnd
gene152107153510
mRNA152107153510
exon152107152824
exon152901152958
exon153249153510
CDS152245152824
CDS152901152958
CDS153249153411

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000013cellulose biosynthetic process,
cellulose synthase (UDP-forming) activity,
response to oxidative stress,
extracellular polysaccharide biosynthetic process,
hydrolase activity, hydrolyzing O-glycosyl compounds,
carbohydrate metabolic process,
coexpression networkCFinderM000528RLK-Pelle_RLCK-XIII (from iTAK)
base-excision repair,
Base_excision_repair
DNA-3-methyladenine glycosylase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03352.12Adenine_glyco194363

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Base excision repairDNA-3-methyladenine glycosylase I [EC:3.2.2.20]ko03410K01246

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0006281DNA repair
GO:0006284base-excision repair
GO:0008725DNA-3-methyladenine glycosylase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.