PH01000297G0090's details annotation
1.Annotation
ICBR annotation: mov34 family protein, putative, expressed
Blast result AT1G80210 : 1.10E-51
Blast annotation: Mov34/MPN/PAD-1 family protein
2.Location
Scaffold: PH01000297
Strand: +
| Region | Start | End |
| gene | 56684 | 62969 |
| mRNA | 56684 | 62969 |
| exon | 56684 | 58154 |
| exon | 59166 | 59251 |
| exon | 59353 | 59517 |
| exon | 60390 | 60562 |
| exon | 61224 | 61304 |
| exon | 61391 | 61445 |
| exon | 61517 | 62969 |
| CDS | 57839 | 58154 |
| CDS | 59166 | 59251 |
| CDS | 59353 | 59517 |
| CDS | 60390 | 60562 |
| CDS | 61224 | 61304 |
| CDS | 61391 | 61445 |
| CDS | 61517 | 61708 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000872 | SWI/SNF-BAF60b Transcription_Regulator(from iTAK) ER to Golgi vesicle-mediated transport, regulation_of_cell_cycle regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity protein_kinase_binding |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01398.20 | JAB | 3 | 37 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.