PH01000297G0230's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT5G14530 : 3.00E-113
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01000297
Strand: +
| Region | Start | End |
| gene | 144885 | 149705 |
| mRNA | 144885 | 149705 |
| exon | 144885 | 145784 |
| exon | 145939 | 146103 |
| exon | 146598 | 147059 |
| exon | 147806 | 147979 |
| exon | 148089 | 148188 |
| exon | 148393 | 148461 |
| exon | 148544 | 148681 |
| exon | 148822 | 148903 |
| exon | 149413 | 149493 |
| exon | 149534 | 149705 |
| CDS | 145576 | 145784 |
| CDS | 145939 | 146103 |
| CDS | 146598 | 147059 |
| CDS | 147806 | 147979 |
| CDS | 148089 | 148188 |
| CDS | 148393 | 148461 |
| CDS | 148544 | 148681 |
| CDS | 148822 | 148903 |
| CDS | 149413 | 149493 |
| CDS | 149534 | 149697 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000331 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 242 | 274 |
| PF00400.31 | WD40 | 326 | 363 |
| PF00400.31 | WD40 | 451 | 477 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.