Annotation of co-expression genes

PH01000301G0590's details annotation

1.Annotation

ICBR annotation: ras-related protein, putative, expressed

Blast result AT3G54840 : 1.90E-75
Blast annotation: Ras-related small GTP-binding family protein

2.Location

Scaffold: PH01000301
Strand: +

RegionStartEnd
gene427773435045
mRNA427773435045
exon427773428168
exon429704429777
exon429924430007
exon430119430213
exon432580432685
exon432904432975
exon434199434288
exon434391434477
exon434678435045
CDS427994428168
CDS429704429777
CDS429924430007
CDS430119430213
CDS432580432685
CDS432904432975
CDS434199434288
CDS434391434477
CDS434678434713

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000909Homologous_recombination
DNA_replication
Mismatch_repair
histone-lysine N-methyltransferase activity,
single-stranded DNA binding,
Golgi vesicle transport,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00071.21Ras83190
PF00071.21Ras201262

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003924GTPase activity
GO:0005525GTP binding
GO:0005622intracellular
GO:0006184GTP catabolic process
GO:0007165signal transduction
GO:0007264small GTPase mediated signal transduction
GO:0015031protein transport
GO:0016020membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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