PH01000301G0600's details annotation
1.Annotation
ICBR annotation: ras-related protein, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000301
Strand: -
| Region | Start | End |
| gene | 437887 | 440151 |
| mRNA | 437887 | 440151 |
| exon | 437887 | 438317 |
| exon | 438630 | 438746 |
| exon | 439284 | 439376 |
| exon | 439530 | 439750 |
| exon | 440060 | 440151 |
| CDS | 438075 | 438317 |
| CDS | 438630 | 438746 |
| CDS | 439284 | 439376 |
| CDS | 439530 | 439750 |
| CDS | 440060 | 440102 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001011 | LSD Transcription_Regulator(from PlantTFDB) C2C2-LSD Transcription_Regulator(from iTAK) protein folding, peptidyl-prolyl cis-trans isomerase activity, hydrolase_activity,_acting_on_acid_anhydrides |
| coexpression network | CFinderM001292 | LSD Transcription_Regulator(from PlantTFDB) C2C2-LSD Transcription_Regulator(from iTAK) CAMK_CDPK (from iTAK) vesicle docking involved in exocytosis, endoplasmic reticulum, Protein_processing_in_endoplasmic_reticulum |
| coexpression network | CFinderM001293 | CAMK_CDPK (from iTAK) vesicle docking involved in exocytosis, Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.