Annotation of co-expression genes

PH01000303G0350's details annotation

1.Annotation

ICBR annotation: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed

Blast result AT1G34210 : 0
Blast annotation: somatic embryogenesis receptor-like kinase 2

2.Location

Scaffold: PH01000303
Strand: +

RegionStartEnd
gene222076232141
mRNA222076232141
exon222076222469
exon225065225071
exon226307226378
exon226978227121
exon228011228082
exon228205228276
exon228357228469
exon229389229523
exon229608229949
exon230052230446
exon230800232141
CDS222385222469
CDS225065225071
CDS226307226378
CDS226978227121
CDS228011228082
CDS228205228276
CDS228357228469
CDS229389229523
CDS229608229949
CDS230052230446
CDS230800231114

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001341RLK-Pelle_LRR-II (from iTAK)
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
microtubule associated complex,
protein phosphorylation,
microtubule-based movement,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00560.32LRR_1124140
PF00069.24Pkinase261531

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.