PH01000303G0880's details annotation
1.Annotation
ICBR annotation: vacuolar protein sorting-associated protein 18, putative, expressed
Blast result AT1G12470 : 2.80E-56
Blast annotation: zinc ion binding
2.Location
Scaffold: PH01000303
Strand: +
| Region | Start | End |
| gene | 561530 | 563199 |
| mRNA | 561530 | 563199 |
| exon | 561530 | 561725 |
| exon | 561914 | 562052 |
| exon | 562177 | 562350 |
| exon | 562399 | 562518 |
| exon | 562680 | 562736 |
| exon | 562836 | 562895 |
| exon | 563144 | 563199 |
| CDS | 561709 | 561725 |
| CDS | 561914 | 562052 |
| CDS | 562177 | 562350 |
| CDS | 562399 | 562518 |
| CDS | 562680 | 562736 |
| CDS | 562836 | 562895 |
| CDS | 563144 | 563158 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001645 | vesicle-mediated transport, lipid glycosylation, GT1 GlycosylTransferases vesicle docking involved in exocytosis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05131.13 | Pep3_Vps18 | 9 | 155 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.