CFinderM001645's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
vesicle-mediated transport,0.002846675GO:0016192
lipid glycosylation,0.006889979GO:0030259
GT1 GlycosylTransferases0.008782803GFam
vesicle docking involved in exocytosis,0.014685992GO:0006904

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000303G0880zinc ion bindingAT1G12470 (2.80E-56)
PH01000303G0900zinc ion bindingAT1G12470 (1.00E-163)
PH01000388G0850Sec1/munc18-like (SM) proteins superfamilyAT3G54860 (9.00E-84)
PH01000811G0740Argonaute family proteinAT2G27880 (0.00E+00)
PH01000896G0660UDP-Glycosyltransferase superfamily proteinAT3G07020 (1.50E-80)
PH01003012G0130Transducin/WD40 repeat-like superfamily proteinAT4G11270 (1.00E-119)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000862DBP Transcription_Regulator(from iTAK)
Golgi stack,
GPI-anchor transamidase complex,
details
CFinderM001531GT1 GlycosylTransferases
lipid glycosylation,
positive_regulation_of_transcription,_DNA-templated
cis-Golgi network,
thylakoid,
sucrose-phosphate synthase activity,
photosystem I,
transcription initiation from RNA polymerase II promoter,
sucrose metabolic process,
Basal_transcription_factors
Starch_and_sucrose_metabolism
details
CFinderM001532GT1 GlycosylTransferases
sucrose-phosphate synthase activity,
lipid glycosylation,
positive_regulation_of_transcription,_DNA-templated
cis-Golgi network,
thylakoid,
transcription initiation from RNA polymerase II promoter,
fructose_6-phosphate_metabolic_process
photosystem I,
6-phosphofructokinase complex,
sucrose metabolic process,
details
CFinderM001642cis-Golgi network,
peptide-methionine_(R)-S-oxide_reductase_activity
details
CFinderM001793cysteine desulfurase activity,
cysteine metabolic process,
6-phosphofructokinase complex,
fructose_6-phosphate_metabolic_process
Sulfur_relay_system
Thiamine_metabolism
6-phosphofructokinase activity,
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides,
Galactose_metabolism
Fructose_and_mannose_metabolism
Pentose_phosphate_pathway
details

4.Expression profilings

Created with Highcharts 4.1.6Gene expression profiling among different tissue samples01234leaf_SRR2035212leaf_SRR2035327leaf_SRR4450543_CKleaf_SRR4450545_Dehydrationleaf_SRR4450547_Dehydrationleaf_SRR4450549_Coldleaf_SRR4450551_ColdLeaf-2Leaf_ERR105068Root_1Root_3Root_5Root_ERR105075RhizomeRhizome_ERR105074culm_SRR1187864shoot_SAM_Ashoot_MIN_Cshoot_YNO_Ashoot_YNO_Cshoot_MNO_Ashoot_MNO_Cshoot_SAM_Cshoot_YIN_Ashoot_YIN_Cshoot_MIN_Ashoot_SRR3050072shoot_SRR3056056shoot_SRR3521411Shoot_A2Shoot_B1Shoot_B3Shoot_C2Shoot_D1Shoot_D3Bud_1Bud_3panicle_early_ERR105069panicle_flowering_ERR105071PH01000303G0880PH01000303G0900PH01000388G0850PH01000811G0740PH01000896G0660PH01003012G0130Highcharts.com