PH01000811G0740's details annotation
1.Annotation
ICBR annotation: PINHEAD, putative, expressed
Blast result AT2G27880 : 0.00E+00
Blast annotation: Argonaute family protein
2.Location
Scaffold: PH01000811
Strand: -
| Region | Start | End |
| gene | 486982 | 494417 |
| mRNA | 486982 | 494417 |
| exon | 486982 | 488108 |
| exon | 488196 | 488227 |
| exon | 488328 | 488422 |
| exon | 488565 | 488638 |
| exon | 488742 | 488877 |
| exon | 488982 | 489045 |
| exon | 489245 | 489387 |
| exon | 489798 | 489935 |
| exon | 490027 | 490148 |
| exon | 490303 | 490411 |
| exon | 490485 | 490607 |
| exon | 490967 | 491038 |
| exon | 491146 | 491253 |
| exon | 491430 | 491546 |
| exon | 491670 | 491802 |
| exon | 491905 | 492011 |
| exon | 492105 | 492217 |
| exon | 492356 | 492489 |
| exon | 492638 | 492784 |
| exon | 492875 | 493074 |
| exon | 493697 | 494417 |
| CDS | 487930 | 488108 |
| CDS | 488196 | 488227 |
| CDS | 488328 | 488422 |
| CDS | 488565 | 488638 |
| CDS | 488742 | 488877 |
| CDS | 488982 | 489045 |
| CDS | 489245 | 489387 |
| CDS | 489798 | 489935 |
| CDS | 490027 | 490148 |
| CDS | 490303 | 490411 |
| CDS | 490485 | 490607 |
| CDS | 490967 | 491038 |
| CDS | 491146 | 491253 |
| CDS | 491430 | 491546 |
| CDS | 491670 | 491802 |
| CDS | 491905 | 492011 |
| CDS | 492105 | 492217 |
| CDS | 492356 | 492489 |
| CDS | 492638 | 492784 |
| CDS | 492875 | 493074 |
| CDS | 493697 | 494362 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001531 | GT1 GlycosylTransferases lipid glycosylation, positive_regulation_of_transcription,_DNA-templated cis-Golgi network, thylakoid, sucrose-phosphate synthase activity, photosystem I, transcription initiation from RNA polymerase II promoter, sucrose metabolic process, Basal_transcription_factors Starch_and_sucrose_metabolism |
| coexpression network | CFinderM001642 | cis-Golgi network, peptide-methionine_(R)-S-oxide_reductase_activity |
| coexpression network | CFinderM001645 | vesicle-mediated transport, lipid glycosylation, GT1 GlycosylTransferases vesicle docking involved in exocytosis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16486.4 | ArgoN | 200 | 331 |
| PF08699.9 | ArgoL1 | 341 | 391 |
| PF02170.21 | PAZ | 397 | 522 |
| PF16488.4 | ArgoL2 | 532 | 578 |
| PF16487.4 | ArgoMid | 589 | 667 |
| PF02171.16 | Piwi | 678 | 962 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.