PH01000303G0900's details annotation
1.Annotation
ICBR annotation: vacuolar protein sorting-associated protein 18, putative, expressed
Blast result AT1G12470 : 1.00E-163
Blast annotation: zinc ion binding
2.Location
Scaffold: PH01000303
Strand: +
| Region | Start | End |
| gene | 569979 | 576128 |
| mRNA | 569979 | 576128 |
| exon | 569979 | 570408 |
| exon | 573143 | 573245 |
| exon | 573648 | 573753 |
| exon | 573912 | 574100 |
| exon | 574225 | 574452 |
| exon | 574631 | 574786 |
| exon | 575112 | 575273 |
| exon | 575384 | 575500 |
| exon | 575576 | 576128 |
| CDS | 570141 | 570408 |
| CDS | 573143 | 573245 |
| CDS | 573648 | 573753 |
| CDS | 573912 | 574100 |
| CDS | 574225 | 574452 |
| CDS | 574631 | 574786 |
| CDS | 575112 | 575273 |
| CDS | 575384 | 575500 |
| CDS | 575576 | 575752 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001645 | vesicle-mediated transport, lipid glycosylation, GT1 GlycosylTransferases vesicle docking involved in exocytosis, |
| coexpression network | CFinderM001793 | cysteine desulfurase activity, cysteine metabolic process, 6-phosphofructokinase complex, fructose_6-phosphate_metabolic_process Sulfur_relay_system Thiamine_metabolism 6-phosphofructokinase activity, hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, Galactose_metabolism Fructose_and_mannose_metabolism Pentose_phosphate_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00637.19 | Clathrin | 111 | 258 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006886 | intracellular protein transport |
| GO:0016192 | vesicle-mediated transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.