PH01000305G0050's details annotation
1.Annotation
ICBR annotation: glutaredoxin domain containing protein, putative, expressed
Blast result AT3G11920 : 1.00E-104
Blast annotation: glutaredoxin-related
2.Location
Scaffold: PH01000305
Strand: +
| Region | Start | End |
| gene | 34750 | 37544 |
| mRNA | 34750 | 37544 |
| exon | 34750 | 35592 |
| exon | 35969 | 36024 |
| exon | 36117 | 36380 |
| exon | 36494 | 36782 |
| exon | 36884 | 37080 |
| exon | 37166 | 37544 |
| CDS | 35545 | 35592 |
| CDS | 35969 | 36024 |
| CDS | 36117 | 36380 |
| CDS | 36494 | 36782 |
| CDS | 36884 | 37080 |
| CDS | 37166 | 37319 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000016 | protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, protein serine/threonine kinase activity, ATP binding, RLK-Pelle_LRR-XII-1 (from iTAK) RLK-Pelle_DLSV (from iTAK) RLK-Pelle_WAK (from iTAK) ADP_binding polysaccharide_binding transmembrane_transporter_activity WRKY Transcription_Regulator(from PlantTFDB) recognition of pollen, transmembrane transport, defense response, RLK-Pelle_L-LEC (from iTAK) membrane, integral to membrane, RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATPase activity, substrate-specific transmembrane transporter activity, RLK-Pelle_LRR-XI-1 (from iTAK) 6-phosphofructokinase complex, |
| coexpression network | CFinderM000291 | extracellular matrix, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00610.20 | DEP | 17 | 49 |
| PF04784.13 | DUF547 | 141 | 262 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0035556 | intracellular signal transduction |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.