PH01000306G0300's details annotation
1.Annotation
ICBR annotation: hydrolase, alpha/beta fold family domain containing protein
Blast result AT1G13820 : 1.20E-75
Blast annotation: alpha/beta-Hydrolases superfamily protein
2.Location
Scaffold: PH01000306
Strand: -
| Region | Start | End |
| gene | 158409 | 168891 |
| mRNA | 158409 | 168891 |
| exon | 158409 | 158968 |
| exon | 159767 | 159885 |
| exon | 160252 | 160317 |
| exon | 161008 | 161103 |
| exon | 161561 | 161650 |
| exon | 164319 | 164408 |
| exon | 164608 | 164703 |
| exon | 166165 | 166321 |
| exon | 166499 | 166596 |
| exon | 166853 | 168891 |
| CDS | 158656 | 158968 |
| CDS | 159767 | 159885 |
| CDS | 160252 | 160317 |
| CDS | 161008 | 161103 |
| CDS | 161561 | 161650 |
| CDS | 164319 | 164408 |
| CDS | 164608 | 164703 |
| CDS | 166165 | 166321 |
| CDS | 166499 | 166596 |
| CDS | 166853 | 166936 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000535 | GT37 GlycosylTransferases CMGC_MAPK (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12146.7 | Hydrolase_4 | 52 | 266 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.