PH01000308G0750's details annotation
1.Annotation
ICBR annotation: lissencephaly type-1-like homology motif, putative, expressed
Blast result AT1G80490 : 0
Blast annotation: TOPLESS-related 1
2.Location
Scaffold: PH01000308
Strand: -
| Region | Start | End |
| gene | 476859 | 484428 |
| mRNA | 476859 | 484428 |
| exon | 476859 | 478014 |
| exon | 478296 | 478475 |
| exon | 479096 | 479242 |
| exon | 479358 | 479435 |
| exon | 479512 | 479676 |
| exon | 479785 | 480019 |
| exon | 480112 | 480239 |
| exon | 480337 | 480432 |
| exon | 480519 | 480614 |
| exon | 480723 | 480796 |
| exon | 480871 | 480940 |
| exon | 481033 | 481142 |
| exon | 481242 | 481404 |
| exon | 481535 | 481650 |
| exon | 481750 | 481870 |
| exon | 481964 | 482141 |
| exon | 482964 | 483122 |
| exon | 483239 | 483352 |
| exon | 483433 | 483612 |
| exon | 483708 | 484428 |
| CDS | 477907 | 478014 |
| CDS | 478296 | 478475 |
| CDS | 479096 | 479242 |
| CDS | 479358 | 479435 |
| CDS | 479512 | 479676 |
| CDS | 479785 | 480019 |
| CDS | 480112 | 480239 |
| CDS | 480337 | 480432 |
| CDS | 480519 | 480614 |
| CDS | 480723 | 480796 |
| CDS | 480871 | 480940 |
| CDS | 481033 | 481142 |
| CDS | 481242 | 481404 |
| CDS | 481535 | 481650 |
| CDS | 481750 | 481870 |
| CDS | 481964 | 482141 |
| CDS | 482964 | 483122 |
| CDS | 483239 | 483352 |
| CDS | 483433 | 483612 |
| CDS | 483708 | 483787 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000448 | COPII vesicle coat, Protein_processing_in_endoplasmic_reticulum Protein_export |
| coexpression network | CFinderM000449 | glycerol ether metabolic process, cell redox homeostasis, |
| coexpression network | CFinderM000862 | DBP Transcription_Regulator(from iTAK) Golgi stack, GPI-anchor transamidase complex, |
| coexpression network | CFinderM001091 | DBP Transcription_Regulator(from iTAK) protein dephosphorylation, nucleosome assembly, |
| coexpression network | CFinderM001270 | lipid metabolic process, |
| coexpression network | CFinderM001725 | cellular protein metabolic process, MYB Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 456 | 489 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.