Annotation of co-expression genes

PH01000311G0590's details annotation

1.Annotation

ICBR annotation: transcription elongation factor SPT5 homolog 1, putative, expressed

Blast result AT4G08350 : 0.00E+00
Blast annotation: global transcription factor group A2

2.Location

Scaffold: PH01000311
Strand: -

RegionStartEnd
gene315880324061
mRNA315880324061
exon315880316145
exon316245316345
exon316471316702
exon316803316902
exon317068317137
exon317346317473
exon317509317557
exon317631317801
exon317897317996
exon318088318231
exon318339318441
exon318706318803
exon318902319057
exon319138319495
exon319577319656
exon320031320114
exon320191320352
exon320419320562
exon320654320892
exon321949324061
CDS315903316145
CDS316245316345
CDS316471316702
CDS316803316902
CDS317068317137
CDS317346317473
CDS317509317557
CDS317631317801
CDS317897317996
CDS318088318231
CDS318339318441
CDS318706318803
CDS318902319057
CDS319138319495
CDS319577319656
CDS320031320114
CDS320191320352
CDS320419320562
CDS320654320892
CDS321949322270

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF11942.7Spt5_N87174
PF03439.12Spt5-NGN180261
PF00467.28KOW479506

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003735structural constituent of ribosome
GO:0005622intracellular
GO:0005840ribosome
GO:0006357regulation of transcription from RNA polymerase II promoter
GO:0006412translation
GO:0032784regulation of DNA-dependent transcription, elongation
GO:0032968positive regulation of transcription elongation from RNA polymerase II promoter

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.