PH01000313G0200's details annotation
1.Annotation
ICBR annotation: protein transport protein Sec61 subunit alpha, putative, expressed
Blast result AT2G34250 : 0
Blast annotation: SecY protein transport family protein
2.Location
Scaffold: PH01000313
Strand: -
| Region | Start | End |
| gene | 158313 | 163655 |
| mRNA | 158313 | 163655 |
| exon | 158313 | 158979 |
| exon | 160078 | 160213 |
| exon | 160349 | 160473 |
| exon | 160554 | 160908 |
| exon | 160987 | 161214 |
| exon | 161979 | 163655 |
| CDS | 158740 | 158979 |
| CDS | 160078 | 160213 |
| CDS | 160349 | 160473 |
| CDS | 160554 | 160908 |
| CDS | 160987 | 161214 |
| CDS | 161979 | 162322 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001407 | threonine-type endopeptidase activity, endopeptidase activity, proteolysis involved in cellular protein catabolic process, proteasome core complex, Proteasome RLK-Pelle_LRR-XIV (from iTAK) Protein_processing_in_endoplasmic_reticulum proteasome core complex, alpha-subunit complex, Protein_export |
| coexpression network | CFinderM001748 | methionine metabolic process, methylenetetrahydrofolate reductase (NADPH) activity, One_carbon_pool_by_folate Carbon_fixation_pathways_in_prokaryotes Protein_export |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10559.8 | Plug_translocon | 42 | 76 |
| PF00344.19 | SecY | 77 | 458 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein export | protein transport protein SEC61 subunit alpha | ko03060 | K10956 |
| Protein processing in endoplasmic reticulum | protein transport protein SEC61 subunit alpha | ko04141 | K10956 |
| Phagosome | protein transport protein SEC61 subunit alpha | ko04145 | K10956 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0015031 | protein transport |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.