PH01000314G0190's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G12650 : 5.20E-36
Blast annotation: -
2.Location
Scaffold: PH01000314
Strand: +
| Region | Start | End |
| gene | 149624 | 155791 |
| mRNA | 149624 | 155791 |
| exon | 149624 | 150086 |
| exon | 151285 | 151351 |
| exon | 152123 | 152175 |
| exon | 152607 | 152661 |
| exon | 152760 | 152834 |
| exon | 152865 | 152928 |
| exon | 155303 | 155349 |
| exon | 155440 | 155791 |
| CDS | 149902 | 150086 |
| CDS | 151285 | 151351 |
| CDS | 152123 | 152175 |
| CDS | 152607 | 152661 |
| CDS | 152760 | 152834 |
| CDS | 152865 | 152928 |
| CDS | 155303 | 155349 |
| CDS | 155440 | 155541 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000592 | transcription, DNA-dependent, cytoplasm, |
| coexpression network | CFinderM001142 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06102.11 | RRP36 | 62 | 143 |
| PF06102.11 | RRP36 | 163 | 204 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.