PH01000316G0770's details annotation
1.Annotation
ICBR annotation: DCL3, putative, expressed
Blast result AT3G43920 : 2.00E-134
Blast annotation: dicer-like 3
2.Location
Scaffold: PH01000316
Strand: +
| Region | Start | End |
| gene | 492991 | 509117 |
| mRNA | 492991 | 509117 |
| exon | 492991 | 493683 |
| exon | 496220 | 496351 |
| exon | 496511 | 496782 |
| exon | 497441 | 497507 |
| exon | 499103 | 499208 |
| exon | 499307 | 499487 |
| exon | 500225 | 500359 |
| exon | 500477 | 500516 |
| exon | 501065 | 501129 |
| exon | 501520 | 501576 |
| exon | 501746 | 501898 |
| exon | 502304 | 502478 |
| exon | 502650 | 502755 |
| exon | 502848 | 503040 |
| exon | 503132 | 503292 |
| exon | 503395 | 503551 |
| exon | 503915 | 504023 |
| exon | 504183 | 504454 |
| exon | 504547 | 505043 |
| exon | 505129 | 505226 |
| exon | 506194 | 506579 |
| exon | 506681 | 506962 |
| exon | 507238 | 507564 |
| exon | 507651 | 507831 |
| exon | 507967 | 508078 |
| exon | 508226 | 508418 |
| exon | 508622 | 509117 |
| CDS | 493581 | 493683 |
| CDS | 496220 | 496351 |
| CDS | 496511 | 496782 |
| CDS | 497441 | 497507 |
| CDS | 499103 | 499208 |
| CDS | 499307 | 499487 |
| CDS | 500225 | 500359 |
| CDS | 500477 | 500516 |
| CDS | 501065 | 501129 |
| CDS | 501520 | 501576 |
| CDS | 501746 | 501898 |
| CDS | 502304 | 502478 |
| CDS | 502650 | 502755 |
| CDS | 502848 | 503040 |
| CDS | 503132 | 503292 |
| CDS | 503395 | 503551 |
| CDS | 503915 | 504023 |
| CDS | 504183 | 504454 |
| CDS | 504547 | 505043 |
| CDS | 505129 | 505226 |
| CDS | 506194 | 506579 |
| CDS | 506681 | 506962 |
| CDS | 507238 | 507564 |
| CDS | 507651 | 507831 |
| CDS | 507967 | 508078 |
| CDS | 508226 | 508418 |
| CDS | 508622 | 508735 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001406 | chloroplast, RNA processing, |
| coexpression network | CFinderM001580 | iron-sulfur cluster assembly, RNA processing, |
| coexpression network | CFinderM001590 | protein processing, peroxiredoxin activity, antioxidant activity, integral to membrane, Biosynthesis_of_unsaturated_fatty_acids Fatty_acid_elongation oxidoreductase activity, acting on the CH-CH group of donors, double-stranded RNA binding, ribonuclease III activity, |
| coexpression network | CFinderM001815 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00271.30 | Helicase_C | 531 | 636 |
| PF02170.21 | PAZ | 943 | 1011 |
| PF00636.25 | Ribonuclease_3 | 1155 | 1266 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0003723 | RNA binding |
| GO:0003725 | double-stranded RNA binding |
| GO:0004386 | helicase activity |
| GO:0004525 | ribonuclease III activity |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0006396 | RNA processing |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.