PH01000317G1200's details annotation
1.Annotation
ICBR annotation: mitotic checkpoint family protein, putative, expressed
Blast result AT5G49880 : 1.70E-79
Blast annotation: mitotic checkpoint family protein
2.Location
Scaffold: PH01000317
Strand: -
| Region | Start | End |
| gene | 786544 | 798597 |
| mRNA | 786544 | 798597 |
| exon | 786544 | 787303 |
| exon | 787912 | 787950 |
| exon | 788027 | 788155 |
| exon | 788839 | 788908 |
| exon | 788991 | 789078 |
| exon | 789448 | 789610 |
| exon | 790832 | 791003 |
| exon | 791277 | 791524 |
| exon | 792224 | 792346 |
| exon | 792522 | 792614 |
| exon | 792693 | 792890 |
| exon | 793051 | 793211 |
| exon | 793576 | 793663 |
| exon | 794019 | 794249 |
| exon | 796418 | 796564 |
| exon | 796874 | 798597 |
| CDS | 787214 | 787303 |
| CDS | 787912 | 787950 |
| CDS | 788027 | 788155 |
| CDS | 788839 | 788908 |
| CDS | 788991 | 789078 |
| CDS | 789448 | 789610 |
| CDS | 790832 | 791003 |
| CDS | 791277 | 791524 |
| CDS | 792224 | 792346 |
| CDS | 792522 | 792614 |
| CDS | 792693 | 792890 |
| CDS | 793051 | 793211 |
| CDS | 793576 | 793663 |
| CDS | 794019 | 794249 |
| CDS | 796418 | 796564 |
| CDS | 796874 | 797044 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000898 | WASH_complex cullin-RING ubiquitin ligase complex, PHD Transcription_Regulator(from iTAK) mitotic_spindle_assembly_checkpoint ubiquitin protein ligase binding, cysteine-type peptidase activity, protein serine/threonine phosphatase activity, |
| coexpression network | CFinderM001242 | mitotic_spindle_assembly_checkpoint WASH_complex PHD Transcription_Regulator(from iTAK) N-Glycan_biosynthesis Various_types_of_N-glycan_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05557.12 | MAD | 537 | 732 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0007094 | mitotic spindle assembly checkpoint |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.