PH01000328G0720's details annotation
1.Annotation
ICBR annotation: enzyme of the cupin superfamily protein, putative, expressed
Blast result AT4G10300 : 4.70E-45
Blast annotation: RmlC-like cupins superfamily protein
2.Location
Scaffold: PH01000328
Strand: +
| Region | Start | End |
| gene | 500731 | 501563 |
| mRNA | 500731 | 501563 |
| exon | 500731 | 501087 |
| exon | 501214 | 501563 |
| CDS | 500864 | 501087 |
| CDS | 501214 | 501418 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000220 | phospholipid metabolic process, N-methyltransferase activity, Phosphatidylinositol_signaling_system phosphoglycolate phosphatase activity, |
| coexpression network | CFinderM000354 | chromosome, DNA metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05899.11 | Cupin_3 | 66 | 139 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.