Annotation of co-expression genes

PH01000338G0680's details annotation

1.Annotation

ICBR annotation: SHR5-receptor-like kinase, putative, expressed

Blast result AT1G56130 : 0.00E+00
Blast annotation: Leucine-rich repeat transmembrane protein kinase

2.Location

Scaffold: PH01000338
Strand: -

RegionStartEnd
gene502225514215
mRNA502225514215
exon502225503411
exon503861504011
exon504100504331
exon504423504633
exon504903505021
exon505112505258
exon505898506096
exon506182506561
exon506677506739
exon507273507336
exon507414507498
exon507985508059
exon508335508406
exon508989509057
exon509137509208
exon509333509404
exon510443510644
exon513674514215
CDS503058503411
CDS503861504011
CDS504100504331
CDS504423504633
CDS504903505021
CDS505112505258
CDS505898506096
CDS506182506561
CDS506677506739
CDS507273507336
CDS507414507498
CDS507985508059
CDS508335508406
CDS508989509057
CDS509137509208
CDS509333509404
CDS510443510644
CDS513674513959

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001214PLATZ Transcription_Regulator(from iTAK)
RLK-Pelle_LRR-VII-2 (from iTAK)
protein complex,
microtubule,
microtubule-based process,
translational initiation,
protein polymerization,
RLK-Pelle_DLSV (from iTAK)
Phagosome
RNA_transport

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF11721.7Malectin357542
PF00069.24Pkinase621884

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.