PH01000339G0020's details annotation
1.Annotation
ICBR annotation: helix-loop-helix DNA-binding domain containing protein, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000339
Strand: +
| Region | Start | End |
| gene | 6011 | 7219 |
| mRNA | 6011 | 7219 |
| exon | 6011 | 6338 |
| exon | 6469 | 7219 |
| CDS | 6144 | 6338 |
| CDS | 6469 | 6657 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000836 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, cellular protein modification process, nitrogen compound metabolic process, response to stress, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02496.15 | ABA_WDS | 39 | 115 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006950 | response to stress |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.