PH01000343G0910's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G17350 : 1.00E-54
Blast annotation: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region
2.Location
Scaffold: PH01000343
Strand: -
| Region | Start | End |
| gene | 649004 | 650497 |
| mRNA | 649004 | 650497 |
| exon | 649004 | 649637 |
| exon | 649732 | 649867 |
| exon | 649950 | 650072 |
| exon | 650165 | 650497 |
| CDS | 649111 | 649637 |
| CDS | 649732 | 649867 |
| CDS | 649950 | 650072 |
| CDS | 650165 | 650443 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000178 | cellular glucan metabolic process, xyloglucan:xyloglucosyl transferase activity, cell wall, apoplast, GH16 Glycoside_Hydrolases WRKY Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05703.10 | Auxin_canalis | 28 | 93 |
| PF05703.10 | Auxin_canalis | 133 | 206 |
| PF08458.9 | PH_2 | 220 | 334 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.