PH01000345G0120's details annotation
1.Annotation
ICBR annotation: phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative, expressed
Blast result AT2G34980 : 1.20E-97
Blast annotation: phosphatidylinositolglycan synthase family protein
2.Location
Scaffold: PH01000345
Strand: +
| Region | Start | End |
| gene | 108007 | 111710 |
| mRNA | 108007 | 111710 |
| exon | 108007 | 111710 |
| CDS | 109417 | 110322 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001409 | Whirly Transcription_Regulator(from PlantTFDB) Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis phosphatidylinositol N-acetylglucosaminyltransferase activity, GPI anchor biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06432.10 | GPI2 | 14 | 291 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycosylphosphatidylinositol(GPI)-anchor biosynthesis | phosphatidylinositol glycan, class C | ko00563 | K03859 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006506 | GPI anchor biosynthetic process |
| GO:0016021 | integral to membrane |
| GO:0017176 | phosphatidylinositol N-acetylglucosaminyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.