Annotation of co-expression genes

PH01000349G0410's details annotation

1.Annotation

ICBR annotation: radical SAM enzyme, putative, expressed

Blast result AT2G20860 : 1.00E-137
Blast annotation: lipoic acid synthase 1

2.Location

Scaffold: PH01000349
Strand: +

RegionStartEnd
gene300642303670
mRNA300642303670
exon300642301218
exon302285302496
exon302680302975
exon303436303670
CDS300788301218
CDS302285302496
CDS302680302975
CDS303436303561

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001756Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Lipoic_acid_metabolism
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
aromatic amino acid family biosynthetic process,
lipoate biosynthetic process,
lipoate synthase activity,
3-dehydroquinate synthase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF16881.4LIAS_N75113

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Lipoic acid metabolismlipoic acid synthetase [EC:2.8.1.8]ko00785K03644

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0009107lipoate biosynthetic process
GO:0016992lipoate synthase activity
GO:0051536iron-sulfur cluster binding
GO:00515394 iron, 4 sulfur cluster binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.