PH01000352G0150's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT4G29860 : 9.60E-93
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01000352
Strand: +
| Region | Start | End |
| gene | 86506 | 97343 |
| mRNA | 86506 | 97343 |
| exon | 86506 | 86746 |
| exon | 86857 | 86919 |
| exon | 87496 | 87552 |
| exon | 89070 | 89269 |
| exon | 89408 | 89463 |
| exon | 89631 | 89724 |
| exon | 90547 | 90613 |
| exon | 92726 | 92825 |
| exon | 93829 | 93935 |
| exon | 94240 | 94303 |
| exon | 94577 | 97343 |
| CDS | 86625 | 86746 |
| CDS | 86857 | 86919 |
| CDS | 87496 | 87552 |
| CDS | 89070 | 89269 |
| CDS | 89408 | 89463 |
| CDS | 89631 | 89724 |
| CDS | 90547 | 90613 |
| CDS | 92726 | 92825 |
| CDS | 93829 | 93935 |
| CDS | 94240 | 94303 |
| CDS | 94577 | 94717 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000217 | glycerol ether metabolic process, RNA-dependent DNA replication, translational initiation, RNA metabolic process, RNA_transport |
| coexpression network | CFinderM000389 | protein folding, response to heat, unfolded protein binding, |
| coexpression network | CFinderM001142 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 15 | 51 |
| PF00400.31 | WD40 | 300 | 335 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.