PH01000356G0330's details annotation
1.Annotation
ICBR annotation: ribosomal protein, putative, expressed
Blast result AT3G04400 : 3.40E-76
Blast annotation: Ribosomal protein L14p/L23e family protein
2.Location
Scaffold: PH01000356
Strand: +
| Region | Start | End |
| gene | 216419 | 219002 |
| mRNA | 216419 | 219002 |
| exon | 216419 | 216500 |
| exon | 217468 | 217752 |
| exon | 218512 | 218553 |
| exon | 218789 | 219002 |
| CDS | 216488 | 216500 |
| CDS | 217468 | 217752 |
| CDS | 218512 | 218553 |
| CDS | 218789 | 218871 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001426 | protein import into mitochondrial outer membrane, cell volume homeostasis, 'de novo' IMP biosynthetic process, mitochondrial outer membrane translocase complex, chloride transport, phosphoribosylformylglycinamidine cyclo-ligase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00238.18 | Ribosomal_L14 | 22 | 140 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L23e | ko03011 | K02894 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.