Annotation of co-expression genes

PH01000358G0180's details annotation

1.Annotation

ICBR annotation: pollen-specific protein SF21, putative, expressed

Blast result AT5G56750 : 4.00E-145
Blast annotation: N-MYC downregulated-like 1

2.Location

Scaffold: PH01000358
Strand: +

RegionStartEnd
gene136953140653
mRNA136953140653
exon136953137165
exon137901138000
exon138100138197
exon138257138396
exon138496138556
exon138632138718
exon138824138901
exon138988139095
exon139151139206
exon139296139431
exon139521140653
CDS137106137165
CDS137901138000
CDS138100138197
CDS138257138396
CDS138496138556
CDS138632138718
CDS138824138901
CDS138988139095
CDS139151139206
CDS139296139431
CDS139521139742

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000118
coexpression networkCFinderM000155
coexpression networkCFinderM000792GT31 GlycosylTransferases
fatty-acyl-CoA binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03096.13Ndr2187
PF03096.13Ndr103339

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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