Annotation of co-expression genes

PH01000364G0120's details annotation

1.Annotation

ICBR annotation: spo0B-associated GTP-binding protein, putative, expressed

Blast result AT5G18570 : 1.00E-173
Blast annotation: GTP1/OBG family protein

2.Location

Scaffold: PH01000364
Strand: +

RegionStartEnd
gene107186112245
mRNA107186112245
exon107186108599
exon109848110121
exon110277110568
exon110809110968
exon111408111516
exon111660111747
exon111879112245
CDS107263108599
CDS109848110121
CDS110277110568
CDS110809110968
CDS111408111516
CDS111660111747
CDS111879112072

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000538GT61 GlycosylTransferases
RLK-Pelle_PERK-1 (from iTAK)
GT47 GlycosylTransferases
Aminoacyl-tRNA_biosynthesis
threonyl-tRNA aminoacylation,
response to oxidative stress,
histidine_catabolic_process_to_glutamate_and_formamide

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01018.21GTP1_OBG301454
PF01926.22MMR_HSR1457577
PF09269.10DUF1967660729

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0000287magnesium ion binding
GO:0003924GTPase activity
GO:0005525GTP binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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