PH01000364G1140's details annotation
1.Annotation
ICBR annotation: 60S ribosomal protein L18-3, putative, expressed
Blast result AT5G27850 : 9.00E-88
Blast annotation: Ribosomal protein L18e/L15 superfamily protein
2.Location
Scaffold: PH01000364
Strand: +
| Region | Start | End |
| gene | 738540 | 740856 |
| mRNA | 738540 | 740856 |
| exon | 738540 | 738636 |
| exon | 738725 | 738814 |
| exon | 738908 | 739036 |
| exon | 739142 | 739324 |
| exon | 740360 | 740856 |
| CDS | 738634 | 738636 |
| CDS | 738725 | 738814 |
| CDS | 738908 | 739036 |
| CDS | 739142 | 739324 |
| CDS | 740360 | 740518 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000806 | Ribosome translation, intracellular, structural constituent of ribosome, 5S rRNA binding, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity protein_kinase_binding |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF17135.3 | Ribosomal_L18 | 2 | 187 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L18e | ko03011 | K02883 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.