|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Ribosome | 1.66E-05 | KEGG | | translation, | 0.000186596 | GO:0006412 | | intracellular, | 0.000337137 | GO:0005622 | | structural constituent of ribosome, | 0.000387328 | GO:0003735 | | 5S rRNA binding, | 0.004281183 | GO:0008097 | | regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity | 0.020566741 | GO:0000079 | | protein_kinase_binding | 0.028461046 | GO:0019901 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000045G1430 | breast basic conserved 1 | AT3G49010 (2.70E-91) | | PH01000364G1140 | Ribosomal protein L18e/L15 superfamily protein | AT5G27850 (9.00E-88) | | PH01000455G0090 | Cyclin family protein | AT5G45190 (5.10E-32) | | PH01000473G0160 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT2G18520 (2.90E-74) | | PH01001394G0330 | Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain | AT4G23620 (1.70E-89) | | PH01001797G0380 | RING/U-box superfamily protein | AT1G75400 (6.60E-54) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000299 | nucleus,
B3-ARF Transcription_Regulator(from iTAK)
RLK-Pelle_Extensin (from iTAK)
ARF Transcription_Regulator(from PlantTFDB)
GRF Transcription_Regulator(from PlantTFDB)
AGC_RSK-2 (from iTAK)
regulation of transcription, DNA-dependent,
Nucleotide_excision_repair
DNA_replication
Mismatch_repair
Homologous_recombination
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
response to hormone stimulus,
DNA metabolic process,
| details | | CFinderM000458 | mTERF Transcription_Regulator(from iTAK)
| details | | CFinderM000463 | exosome_(RNase_complex)
RNA_degradation
| details | | CFinderM001057 | RLK-Pelle_URK-1 (from iTAK)
NEK (from iTAK)
chromatin silencing at telomere,
chromatin modification,
histone acetylation,
| details | | CFinderM001105 | Endocytosis
pseudouridine synthesis,
RNA modification,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
protein_kinase_binding
pseudouridine synthase activity,
| details | | CFinderM001166 | DNA_replication
Nucleotide_excision_repair
Mismatch_repair
Riboflavin_metabolism
histone acetylation,
chromatin modification,
chromatin silencing at telomere,
| details | | CFinderM001243 | regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
Metabolism_of_xenobiotics_by_cytochrome_P450
Drug_metabolism_-_cytochrome_P450
Glutathione_metabolism
protein_kinase_binding
NAD+ ADP-ribosyltransferase activity,
| details | | CFinderM001831 | | details | | CFinderM001832 | histone deacetylation,
Endocytosis
histone deacetylase activity,
cellular protein metabolic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
NAD+ ADP-ribosyltransferase activity,
| details |
4.Expression profilings |
