PH01000455G0090's details annotation
1.Annotation
ICBR annotation: cyclin-T1-2, putative, expressed
Blast result AT5G45190 : 5.10E-32
Blast annotation: Cyclin family protein
2.Location
Scaffold: PH01000455
Strand: +
| Region | Start | End |
| gene | 73565 | 79416 |
| mRNA | 73565 | 79416 |
| exon | 73565 | 75089 |
| exon | 75436 | 75480 |
| exon | 76828 | 76835 |
| exon | 76970 | 77035 |
| exon | 77268 | 77359 |
| exon | 77450 | 77601 |
| exon | 77688 | 79416 |
| CDS | 75023 | 75089 |
| CDS | 75436 | 75480 |
| CDS | 76828 | 76835 |
| CDS | 76970 | 77035 |
| CDS | 77268 | 77359 |
| CDS | 77450 | 77601 |
| CDS | 77688 | 78775 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000299 | nucleus, B3-ARF Transcription_Regulator(from iTAK) RLK-Pelle_Extensin (from iTAK) ARF Transcription_Regulator(from PlantTFDB) GRF Transcription_Regulator(from PlantTFDB) AGC_RSK-2 (from iTAK) regulation of transcription, DNA-dependent, Nucleotide_excision_repair DNA_replication Mismatch_repair Homologous_recombination regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity response to hormone stimulus, DNA metabolic process, |
| coexpression network | CFinderM000463 | exosome_(RNase_complex) RNA_degradation |
| coexpression network | CFinderM000806 | Ribosome translation, intracellular, structural constituent of ribosome, 5S rRNA binding, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity protein_kinase_binding |
| coexpression network | CFinderM001057 | RLK-Pelle_URK-1 (from iTAK) NEK (from iTAK) chromatin silencing at telomere, chromatin modification, histone acetylation, |
| coexpression network | CFinderM001105 | Endocytosis pseudouridine synthesis, RNA modification, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity protein_kinase_binding pseudouridine synthase activity, |
| coexpression network | CFinderM001166 | DNA_replication Nucleotide_excision_repair Mismatch_repair Riboflavin_metabolism histone acetylation, chromatin modification, chromatin silencing at telomere, |
| coexpression network | CFinderM001243 | regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity Metabolism_of_xenobiotics_by_cytochrome_P450 Drug_metabolism_-_cytochrome_P450 Glutathione_metabolism protein_kinase_binding NAD+ ADP-ribosyltransferase activity, |
| coexpression network | CFinderM001831 | |
| coexpression network | CFinderM001832 | histone deacetylation, Endocytosis histone deacetylase activity, cellular protein metabolic process, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity NAD+ ADP-ribosyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0019901 | protein kinase binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.