CFinderM001243's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity0.022436445GO:0000079
Metabolism_of_xenobiotics_by_cytochrome_P4500.028246147KEGG
Drug_metabolism_-_cytochrome_P4500.028246147KEGG
Glutathione_metabolism0.029033967KEGG
protein_kinase_binding0.031161729GO:0019901
NAD+ ADP-ribosyltransferase activity,0.031161729GO:0003950

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000455G0090Cyclin family proteinAT5G45190 (5.10E-32)
PH01001627G0380glutathione S-transferase THETA 1AT5G41210 (3.80E-48)
PH01001797G0380RING/U-box superfamily proteinAT1G75400 (6.60E-54)
PH01001866G0440-- (-)
PH01002340G0320WWE protein-protein interaction domain protein familyAT1G32230 (1.20E-68)
PH01031999G0010-- (-)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000299nucleus,
B3-ARF Transcription_Regulator(from iTAK)
RLK-Pelle_Extensin (from iTAK)
ARF Transcription_Regulator(from PlantTFDB)
GRF Transcription_Regulator(from PlantTFDB)
AGC_RSK-2 (from iTAK)
regulation of transcription, DNA-dependent,
Nucleotide_excision_repair
DNA_replication
Mismatch_repair
Homologous_recombination
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
response to hormone stimulus,
DNA metabolic process,
details
CFinderM000463exosome_(RNase_complex)
RNA_degradation
details
CFinderM000806Ribosome
translation,
intracellular,
structural constituent of ribosome,
5S rRNA binding,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
protein_kinase_binding
details
CFinderM001057RLK-Pelle_URK-1 (from iTAK)
NEK (from iTAK)
chromatin silencing at telomere,
chromatin modification,
histone acetylation,
details
CFinderM001105Endocytosis
pseudouridine synthesis,
RNA modification,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
protein_kinase_binding
pseudouridine synthase activity,
details
CFinderM001166DNA_replication
Nucleotide_excision_repair
Mismatch_repair
Riboflavin_metabolism
histone acetylation,
chromatin modification,
chromatin silencing at telomere,
details
CFinderM001205ribonucleoside_binding
transcription, DNA-dependent,
DNA-directed RNA polymerase activity,
Drug_metabolism_-_cytochrome_P450
Metabolism_of_xenobiotics_by_cytochrome_P450
Glutathione_metabolism
details
CFinderM001383Metabolism_of_xenobiotics_by_cytochrome_P450
Drug_metabolism_-_cytochrome_P450
Glutathione_metabolism
protein transport,
small GTPase mediated signal transduction,
details
CFinderM001384protein transport,
details
CFinderM001720RNA_polymerase_II_transcription_cofactor_activity
NAD+ ADP-ribosyltransferase activity,
mediator complex,
nuclear pore,
regulation of transcription from RNA polymerase II promoter,
protein transport,
details
CFinderM001831details
CFinderM001832histone deacetylation,
Endocytosis
histone deacetylase activity,
cellular protein metabolic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
NAD+ ADP-ribosyltransferase activity,
details

4.Expression profilings