PH01001627G0380's details annotation
1.Annotation
ICBR annotation: glutathione S-transferase, N-terminal domain containing protein, expressed
Blast result AT5G41210 : 3.80E-48
Blast annotation: glutathione S-transferase THETA 1
2.Location
Scaffold: PH01001627
Strand: +
| Region | Start | End |
| gene | 256974 | 262408 |
| mRNA | 256974 | 262408 |
| exon | 256974 | 257902 |
| exon | 259131 | 259257 |
| exon | 261012 | 261091 |
| exon | 261343 | 261548 |
| exon | 261788 | 262408 |
| CDS | 257740 | 257902 |
| CDS | 259131 | 259257 |
| CDS | 261012 | 261091 |
| CDS | 261343 | 261548 |
| CDS | 261788 | 261979 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001057 | RLK-Pelle_URK-1 (from iTAK) NEK (from iTAK) chromatin silencing at telomere, chromatin modification, histone acetylation, |
| coexpression network | CFinderM001205 | ribonucleoside_binding transcription, DNA-dependent, DNA-directed RNA polymerase activity, Drug_metabolism_-_cytochrome_P450 Metabolism_of_xenobiotics_by_cytochrome_P450 Glutathione_metabolism |
| coexpression network | CFinderM001243 | regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity Metabolism_of_xenobiotics_by_cytochrome_P450 Drug_metabolism_-_cytochrome_P450 Glutathione_metabolism protein_kinase_binding NAD+ ADP-ribosyltransferase activity, |
| coexpression network | CFinderM001383 | Metabolism_of_xenobiotics_by_cytochrome_P450 Drug_metabolism_-_cytochrome_P450 Glutathione_metabolism protein transport, small GTPase mediated signal transduction, |
| coexpression network | CFinderM001384 | protein transport, |
| coexpression network | CFinderM001720 | RNA_polymerase_II_transcription_cofactor_activity NAD+ ADP-ribosyltransferase activity, mediator complex, nuclear pore, regulation of transcription from RNA polymerase II promoter, protein transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glutathione metabolism | glutathione S-transferase [EC:2.5.1.18] | ko00480 | K00799 |
| Metabolism of xenobiotics by cytochrome P450 | glutathione S-transferase [EC:2.5.1.18] | ko00980 | K00799 |
| Drug metabolism - cytochrome P450 | glutathione S-transferase [EC:2.5.1.18] | ko00982 | K00799 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.