Annotation of co-expression genes

PH01000366G0740's details annotation

1.Annotation

ICBR annotation: UBA and UBX domain-containing protein, putative, expressed

Blast result AT4G22150 : 8.40E-75
Blast annotation: plant UBX domain-containing protein 3

2.Location

Scaffold: PH01000366
Strand: -

RegionStartEnd
gene483727489548
mRNA483727489548
exon483727484571
exon484660484755
exon485607485898
exon487957488085
exon488834489548
CDS484194484571
CDS484660484755
CDS485607485898
CDS487957488085
CDS488834489372

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000077transcription, DNA-dependent,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF14555.5UBA_41756
PF08059.12SEP293363
PF00789.19UBX404476

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Protein processing in endoplasmic reticulumUBX domain-containing protein 1ko04141K14012

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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