PH01000367G0090's details annotation
1.Annotation
ICBR annotation: BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed
Blast result AT4G02680 : 0.00E+00
Blast annotation: ETO1-like 1
2.Location
Scaffold: PH01000367
Strand: +
| Region | Start | End |
| gene | 68714 | 73671 |
| mRNA | 68714 | 73671 |
| exon | 68714 | 69217 |
| exon | 69436 | 71145 |
| exon | 71434 | 71725 |
| exon | 72520 | 72829 |
| exon | 73175 | 73671 |
| CDS | 69090 | 69217 |
| CDS | 69436 | 71145 |
| CDS | 71434 | 71725 |
| CDS | 72520 | 72829 |
| CDS | 73175 | 73395 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000178 | cellular glucan metabolic process, xyloglucan:xyloglucosyl transferase activity, cell wall, apoplast, GH16 Glycoside_Hydrolases WRKY Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000752 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00651.30 | BTB | 182 | 275 |
| PF13181.5 | TPR_8 | 710 | 738 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.