Annotation of co-expression genes

PH01000382G0190's details annotation

1.Annotation

ICBR annotation: chitin-inducible gibberellin-responsive protein, putative, expressed

Blast result AT1G21450 : 6.00E-144
Blast annotation: SCARECROW-like 1

2.Location

Scaffold: PH01000382
Strand: +

RegionStartEnd
gene115729118264
mRNA115729118264
exon115729117534
exon117747117902
exon118002118264
CDS116138117534
CDS117747117902
CDS118002118200

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000530RLK-Pelle_LRR-XIV (from iTAK)
transmembrane transport,
GRAS Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM000531transmembrane transport,
Plant_hormone_signal_transduction
coexpression networkCFinderM001380Valine,_leucine_and_isoleucine_degradation
RLK-Pelle_LRR-XIV (from iTAK)
Benzoate_degradation
GRAS Transcription_Regulator(from PlantTFDB)
Fatty_acid_metabolism
Biosynthesis_of_unsaturated_fatty_acids
alpha-Linolenic_acid_metabolism
Peroxisome

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)GRAS
Transcription_Regulator(from PlantTFDB)GRAS

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03514.13GRAS214583

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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