Annotation of co-expression genes

PH01000383G0090's details annotation

1.Annotation

ICBR annotation: nucleolar GTP-binding protein 1, putative, expressed

Blast result AT1G80770 : 3.00E-125
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein

2.Location

Scaffold: PH01000383
Strand: +

RegionStartEnd
gene95330103573
mRNA95330103573
exon9533098019
exon9830398558
exon9861298680
exon9882998949
exon9906199125
exon9920899321
exon9950599579
exon100587100625
exon100767100838
exon100945101058
exon101569101640
exon101757101793
exon101844102028
exon102205102399
exon102514103573
CDS9792598019
CDS9830398558
CDS9861298680
CDS9882998949
CDS9906199125
CDS9920899321
CDS9950599579
CDS100587100625
CDS100767100838
CDS100945101058
CDS101569101640
CDS101757101793
CDS101844102028
CDS102205102399
CDS102514102618

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001623Ribosome_biogenesis_in_eukaryotes
ribosome biogenesis,
GTP binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01926.22MMR_HSR1317376
PF06858.13NOG1405462

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Ribosome biogenesis in eukaryotesnucleolar GTP-binding proteinko03008K06943

10.Gene Ontology

GO AccessionGO Annotation
GO:0005525GTP binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.