PH01000383G0480's details annotation
1.Annotation
ICBR annotation: CGMC_MAPKCMGC_2_ERK.13 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
Blast result AT4G01370 : 0.00E+00
Blast annotation: MAP kinase 4
2.Location
Scaffold: PH01000383
Strand: -
| Region | Start | End |
| gene | 377716 | 383331 |
| mRNA | 377716 | 383331 |
| exon | 377716 | 378367 |
| exon | 378579 | 378762 |
| exon | 379335 | 379667 |
| exon | 379848 | 379985 |
| exon | 381549 | 381678 |
| exon | 382379 | 383331 |
| CDS | 378195 | 378367 |
| CDS | 378579 | 378762 |
| CDS | 379335 | 379667 |
| CDS | 379848 | 379985 |
| CDS | 381549 | 381678 |
| CDS | 382379 | 382590 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000535 | GT37 GlycosylTransferases CMGC_MAPK (from iTAK) |
| coexpression network | CFinderM001688 | CBM22 Carbohydrate-Binding_Modules GH10 Glycoside_Hydrolases CMGC_MAPK (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 60 | 342 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004713 | protein tyrosine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.