PH01000390G0680's details annotation
1.Annotation
ICBR annotation: protein-methionine-S-oxide reductase, putative, expressed
Blast result AT1G76060 : 1.10E-39
Blast annotation: LYR family of Fe/S cluster biogenesis protein
2.Location
Scaffold: PH01000390
Strand: +
| Region | Start | End |
| gene | 534681 | 537107 |
| mRNA | 534681 | 537107 |
| exon | 534681 | 535567 |
| exon | 536510 | 537107 |
| CDS | 535250 | 535567 |
| CDS | 536510 | 536983 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001028 | peptide-methionine_(R)-S-oxide_reductase_activity metallopeptidase activity, Ubiquitin_mediated_proteolysis acid-amino acid ligase activity, |
| coexpression network | CFinderM001743 | |
| coexpression network | CFinderM001847 | peptide-methionine_(R)-S-oxide_reductase_activity binding, metallopeptidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05347.14 | Complex1_LYR | 176 | 238 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0033743 | peptide-methionine (R)-S-oxide reductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.